1 Response_reg#1
4-116 aa · 113 aa · 97.4% of protein
Raw token
Response_reg:4:7.31e-19:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS06060
Response regulator, CheY family
Blautia wexlerae · GCF_013302125
ClassRRTypeCheYLength116 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302125#G5A00_RS06060Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length116 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 116 aa (97.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa116 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.31e-19:116:115:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302125::NZ_JAAIPO010000015.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span446-796Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_06080RefSeq proteinWP_173721396.1
Context group ID
GCF_013302125::NZ_JAAIPO010000015.1::G00026Context members
G5A00_RS06060
Partner locus tags
G5A00_RS06060
Partner old locus tags
G5A00_06080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721396.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS06060Primary locus identifier stored in the genes table.
Old locus tagG5A00_06080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000015.1Sequence record reported by the local genomic context database.
Genomic interval446-796 nt351 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span446-796 ntGCF_013302125::NZ_JAAIPO010000015.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000015.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000015.1All displayed genes belong to this local TCS context.
Neighborhood span446-796 nt351 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
446 nt796 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A00_RS06060GCF_013302125#G5A00_RS06060
RRCheYCurrent focus
446-796 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009876865#GT728_RS18415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1027464
Simplified PFAM architecture for RROC_1027464
PFAM domain coverage: 202 / 235 aa (86.0%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[137-225]
- Domain count: 2
- Matched identifier: RROC_1027464
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 137-225 ; LytTR 137-225
Cluster members and taxonomy
Representative gene: GCF_009876865#GT728_RS18415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key