1 HAMP#1
301-370 aa · 70 aa · 11.6% of protein
Raw token
HAMP:301:0.0000000000338:370:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS05640
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS05640Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 601 aa (42.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-465 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:386:4.63e-27:465:80:803 HATPase_c#3
485-588 aa · 104 aa · 17.3% of protein
Raw token
HATPase_c:485:0.0000000000000969:588:106:109- Raw architecture: HAMP:301:0.0000000000338:370:70:69#His_kinase:386:4.63e-27:465:80:80#HATPase_c:485:0.0000000000000969:588:106:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000013.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47214-50835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_05655RefSeq proteinWP_243260020.1
Context group ID
GCF_013302125::NZ_JAAIPO010000013.1::G00022Context members
G5A00_RS05640G5A00_RS05645
Partner locus tags
G5A00_RS05640G5A00_RS05645
Partner old locus tags
G5A00_05655G5A00_05660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243260020.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS05640Primary locus identifier stored in the genes table.
Old locus tagG5A00_05655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000013.1Sequence record reported by the local genomic context database.
Genomic interval47 214-49 019 nt1 806 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 214-50 835 ntGCF_013302125::NZ_JAAIPO010000013.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000013.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000013.1All displayed genes belong to this local TCS context.
Neighborhood span47 214-50 835 nt3 622 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 214 nt50 835 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS05640GCF_013302125#G5A00_RS05640
HKClassicCurrent focus
47 214-49 019 nt · Forward (+)
G5A00_RS05645GCF_013302125#G5A00_RS05645
RRunclassified
49 192-50 835 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS05640The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1049418
Simplified PFAM architecture for HKOC_1049418
PFAM domain coverage: 234 / 601 aa (38.9%)
1 aa601 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-370] | His_kinase[387-463] | HATPase_c[486-589]
- Domain count: 3
- Matched identifier: HKOC_1049418
- Positioned domains: HAMP 318-370 ; His_kinase 387-463 ; HATPase_c 486-589
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS05640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key