1 His_kinase#1
386-465 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:386:5.45e-31:465:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS05560
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength597 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS05560Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 597 aa (31.2%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
485-590 aa · 106 aa · 17.8% of protein
Raw token
HATPase_c:485:0.00000352:590:108:109- Raw architecture: His_kinase:386:5.45e-31:465:80:80#HATPase_c:485:0.00000352:590:108:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000013.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24413-26943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_05575RefSeq proteinWP_243881446.1
Context group ID
GCF_013302125::NZ_JAAIPO010000013.1::G00020Context members
G5A00_RS05560G5A00_RS05565
Partner locus tags
G5A00_RS05560G5A00_RS05565
Partner old locus tags
G5A00_05575G5A00_05580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243881446.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS05560Primary locus identifier stored in the genes table.
Old locus tagG5A00_05575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000013.1Sequence record reported by the local genomic context database.
Genomic interval24 413-26 206 nt1 794 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 413-26 943 ntGCF_013302125::NZ_JAAIPO010000013.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000013.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000013.1All displayed genes belong to this local TCS context.
Neighborhood span24 413-26 943 nt2 531 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 413 nt26 943 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS05560GCF_013302125#G5A00_RS05560
HKClassicCurrent focus
24 413-26 206 nt · Forward (+)
G5A00_RS05565GCF_013302125#G5A00_RS05565
RRunclassified
26 221-26 943 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS05560The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1070584
Simplified PFAM architecture for HKOC_1070584
PFAM domain coverage: 187 / 597 aa (31.3%)
1 aa597 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[386-465] | HATPase_c[484-590]
- Domain count: 2
- Matched identifier: HKOC_1070584
- Positioned domains: His_kinase 386-465 ; HATPase_c 484-590
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS05560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key