1 Response_reg#1
6-113 aa · 108 aa · 47.6% of protein
Raw token
Response_reg:6:1.82e-30:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS05340
Response regulator OmpR family
Blautia wexlerae · GCF_013302125
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS05340Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 227 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:1.2e-30:221:76:77- Raw architecture: Response_reg:6:1.82e-30:113:109:111#Trans_reg_C:146:1.2e-30:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000012.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51197-52785Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_05350RefSeq proteinWP_118219773.1
Context group ID
GCF_013302125::NZ_JAAIPO010000012.1::G00016Context members
G5A00_RS05340G5A00_RS05345
Partner locus tags
G5A00_RS05340G5A00_RS05345
Partner old locus tags
G5A00_05350G5A00_05355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118219773.1Primary protein accession used for annex mappings.
UniProt accessionA0A414U786Primary UniProt accession resolved in the annex database.
UniProt IDA0A414U786_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS05340Primary locus identifier stored in the genes table.
Old locus tagG5A00_05350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000012.1Sequence record reported by the local genomic context database.
Genomic interval51 197-51 880 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 197-52 785 ntGCF_013302125::NZ_JAAIPO010000012.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000012.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000012.1All displayed genes belong to this local TCS context.
Neighborhood span51 197-52 785 nt1 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 197 nt52 785 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS05340GCF_013302125#G5A00_RS05340
RROmpRCurrent focus
51 197-51 880 nt · Forward (+)
G5A00_RS05345GCF_013302125#G5A00_RS05345
HKClassic
51 877-52 785 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003461245#DWX28_RS14925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366857
Simplified PFAM architecture for RROC_1366857
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[146-222]
- Domain count: 2
- Matched identifier: RROC_1366857
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 146-222 ; Trans_reg_C 146-222
Cluster members and taxonomy
Representative gene: GCF_003461245#DWX28_RS14925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key