1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:9.5e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS05230
Response regulator OmpR family
Blautia wexlerae · GCF_013302125
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS05230Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 225 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-221 aa · 73 aa · 32.4% of protein
Raw token
Trans_reg_C:149:2.58e-28:221:76:77- Raw architecture: Response_reg:4:9.5e-29:113:111:111#Trans_reg_C:149:2.58e-28:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000012.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31772-33854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_05240RefSeq proteinWP_055056588.1
Context group ID
GCF_013302125::NZ_JAAIPO010000012.1::G00015Context members
G5A00_RS05230G5A00_RS05235
Partner locus tags
G5A00_RS05230G5A00_RS05235
Partner old locus tags
G5A00_05240G5A00_05245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055056588.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1ALX2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1ALX2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS05230Primary locus identifier stored in the genes table.
Old locus tagG5A00_05240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000012.1Sequence record reported by the local genomic context database.
Genomic interval31 772-32 449 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 772-33 854 ntGCF_013302125::NZ_JAAIPO010000012.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000012.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000012.1All displayed genes belong to this local TCS context.
Neighborhood span31 772-33 854 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 772 nt33 854 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS05230GCF_013302125#G5A00_RS05230
RROmpRCurrent focus
31 772-32 449 nt · Forward (+)
G5A00_RS05235GCF_013302125#G5A00_RS05235
HKClassic
32 433-33 854 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS13300Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1470811
Simplified PFAM architecture for RROC_1470811
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-221]
- Domain count: 2
- Matched identifier: RROC_1470811
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-221 ; Trans_reg_C 150-221
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS13300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key