1 HisKA#1
661-727 aa · 67 aa · 7.6% of protein
Raw token
HisKA:661:0.0000000000000103:727:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS04895
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength882 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS04895Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length882 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 882 aa (18.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa882 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
773-865 aa · 93 aa · 10.5% of protein
Raw token
HATPase_c:773:0.000000000231:865:97:109- Raw architecture: HisKA:661:0.0000000000000103:727:67:64#HATPase_c:773:0.000000000231:865:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000011.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20204-23746Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_04905RefSeq proteinWP_173721319.1
Context group ID
GCF_013302125::NZ_JAAIPO010000011.1::G00013Context members
G5A00_RS04890G5A00_RS04895
Partner locus tags
G5A00_RS04890G5A00_RS04895
Partner old locus tags
G5A00_04900G5A00_04905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721319.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS04895Primary locus identifier stored in the genes table.
Old locus tagG5A00_04905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000011.1Sequence record reported by the local genomic context database.
Genomic interval21 098-23 746 nt2 649 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 204-23 746 ntGCF_013302125::NZ_JAAIPO010000011.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000011.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000011.1All displayed genes belong to this local TCS context.
Neighborhood span20 204-23 746 nt3 543 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 204 nt23 746 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS04890GCF_013302125#G5A00_RS04890
RROmpR
20 204-20 899 nt · Forward (+)
G5A00_RS04895GCF_013302125#G5A00_RS04895
HKClassicCurrent focus
21 098-23 746 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS04895The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0443876
Simplified PFAM architecture for HKOC_0443876
PFAM domain coverage: 157 / 882 aa (17.8%)
1 aa882 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[662-726] | HATPase_c[774-865]
- Domain count: 2
- Matched identifier: HKOC_0443876
- Positioned domains: HisKA 662-726 ; HATPase_c 774-865
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS04895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key