1 HAMP#1
297-366 aa · 70 aa · 11.7% of protein
Raw token
HAMP:297:0.00000000000795:366:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS04725
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS04725Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 599 aa (42.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation3 items
2 His_kinase#2
383-461 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:383:4.86e-33:461:79:803 HATPase_c#3
481-585 aa · 105 aa · 17.5% of protein
Raw token
HATPase_c:481:0.000000000000353:585:109:109- Raw architecture: HAMP:297:0.00000000000795:366:71:69#His_kinase:383:4.86e-33:461:79:80#HATPase_c:481:0.000000000000353:585:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000010.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60243-63594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_04735RefSeq proteinWP_173721311.1
Context group ID
GCF_013302125::NZ_JAAIPO010000010.1::G00008Context members
G5A00_RS04725G5A00_RS04730
Partner locus tags
G5A00_RS04725G5A00_RS04730
Partner old locus tags
G5A00_04735G5A00_04740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721311.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS04725Primary locus identifier stored in the genes table.
Old locus tagG5A00_04735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000010.1Sequence record reported by the local genomic context database.
Genomic interval60 243-62 042 nt1 800 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 243-63 594 ntGCF_013302125::NZ_JAAIPO010000010.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000010.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000010.1All displayed genes belong to this local TCS context.
Neighborhood span60 243-63 594 nt3 352 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 243 nt63 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS04725GCF_013302125#G5A00_RS04725
HKClassicCurrent focus
60 243-62 042 nt · Forward (+)
G5A00_RS04730GCF_013302125#G5A00_RS04730
RRunclassified
62 035-63 594 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS04725The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1058956
Simplified PFAM architecture for HKOC_1058956
PFAM domain coverage: 182 / 599 aa (30.4%)
1 aa599 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[383-459] | HATPase_c[480-584]
- Domain count: 2
- Matched identifier: HKOC_1058956
- Positioned domains: His_kinase 383-459 ; HATPase_c 480-584
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS04725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key