1 HAMP#1
198-265 aa · 68 aa · 13.2% of protein
Raw token
HAMP:198:0.00000000000000224:265:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS03140
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS03140Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 514 aa (47.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation3 items
2 HisKA#2
291-358 aa · 68 aa · 13.2% of protein
Raw token
HisKA:291:0.00000000000000137:358:68:643 HATPase_c#3
403-511 aa · 109 aa · 21.2% of protein
Raw token
HATPase_c:403:1.76e-19:511:110:109- Raw architecture: HAMP:198:0.00000000000000224:265:68:69#HisKA:291:0.00000000000000137:358:68:64#HATPase_c:403:1.76e-19:511:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000006.1::G00074
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63143-65364Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_03150RefSeq proteinWP_055058068.1
Context group ID
GCF_013302125::NZ_JAAIPO010000006.1::G00074Context members
G5A00_RS03135G5A00_RS03140
Partner locus tags
G5A00_RS03135G5A00_RS03140
Partner old locus tags
G5A00_03145G5A00_03150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055058068.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CDF7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CDF7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS03140Primary locus identifier stored in the genes table.
Old locus tagG5A00_03150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000006.1Sequence record reported by the local genomic context database.
Genomic interval63 820-65 364 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 143-65 364 ntGCF_013302125::NZ_JAAIPO010000006.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000006.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000006.1All displayed genes belong to this local TCS context.
Neighborhood span63 143-65 364 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 143 nt65 364 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS03135GCF_013302125#G5A00_RS03135
RROmpR
63 143-63 823 nt · Forward (+)
G5A00_RS03140GCF_013302125#G5A00_RS03140
HKClassicCurrent focus
63 820-65 364 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405455#ARA49_RS09300Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1411583
Simplified PFAM architecture for HKOC_1411583
PFAM domain coverage: 228 / 514 aa (44.4%)
1 aa514 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[215-265] | HisKA[291-358] | HATPase_c[404-512]
- Domain count: 3
- Matched identifier: HKOC_1411583
- Positioned domains: HAMP 215-265 ; HisKA 291-358 ; HATPase_c 404-512
Cluster members and taxonomy
Representative gene: GCF_001405455#ARA49_RS09300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key