1 Response_reg#1
4-116 aa · 113 aa · 21.9% of protein
Raw token
Response_reg:4:3.69e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4449_RS15775
Response regulator, unclassified
Blautia wexlerae · GCF_013301765
ClassRRTypeunclassifiedLength517 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301765#G4449_RS15775Stable P2CS identifier used across views.
GenomeGCF_013301765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length517 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 517 aa (37.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa517 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
423-463 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:423:0.00000000000237:463:41:423 HTH_AraC#3
477-514 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:477:0.0000003:514:38:42- Raw architecture: Response_reg:4:3.69e-28:116:113:111#HTH_AraC:423:0.00000000000237:463:41:42#HTH_AraC:477:0.0000003:514:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301765::NZ_JAAIOY010000066.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5863-9242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4449_15825RefSeq proteinWP_173684741.1
Context group ID
GCF_013301765::NZ_JAAIOY010000066.1::G00052Context members
G4449_RS15770G4449_RS15775
Partner locus tags
G4449_RS15770G4449_RS15775
Partner old locus tags
G4449_15820G4449_15825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173684741.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4449_RS15775Primary locus identifier stored in the genes table.
Old locus tagG4449_15825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOY010000066.1Sequence record reported by the local genomic context database.
Genomic interval7 689-9 242 nt1 554 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 863-9 242 ntGCF_013301765::NZ_JAAIOY010000066.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301765::NZ_JAAIOY010000066.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOY010000066.1All displayed genes belong to this local TCS context.
Neighborhood span5 863-9 242 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 863 nt9 242 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4449_RS15770GCF_013301765#G4449_RS15770
HKClassic
5 863-7 689 nt · Reverse (-)
G4449_RS15775GCF_013301765#G4449_RS15775
RRunclassifiedCurrent focus
7 689-9 242 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS15285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0132110
Simplified PFAM architecture for RROC_0132110
PFAM domain coverage: 194 / 517 aa (37.5%)
1 aa517 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[423-463] | HTH_AraC[475-514]
- Domain count: 3
- Matched identifier: RROC_0132110
- Positioned domains: Response_reg 4-116 ; HTH_AraC 423-463 ; HTH_AraC 475-514
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS15285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301765
AssemblyASM1330176v1 · Contighaploid
Genome composition4 097 873 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key