1 Response_reg#1
7-110 aa · 104 aa · 20.8% of protein
Raw token
Response_reg:7:2.92e-27:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4449_RS14845
Response regulator RpfG family
Blautia wexlerae · GCF_013301765
ClassRRTypeRpfGLength499 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_013301765#G4449_RS14845Stable P2CS identifier used across views.
GenomeGCF_013301765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 499 aa (41.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation2 items
2 HD#2
198-299 aa · 102 aa · 20.4% of protein
Raw token
HD:198:0.000000000000231:299:102:110- Raw architecture: Response_reg:7:2.92e-27:110:105:111#HD:198:0.000000000000231:299:102:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_013301765::NZ_JAAIOY010000057.1::G00048
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span3045-9937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4449_14880RefSeq proteinWP_118611207.1
Context group ID
GCF_013301765::NZ_JAAIOY010000057.1::G00048Context members
G4449_RS14830G4449_RS14835G4449_RS14845
Partner locus tags
G4449_RS14830G4449_RS14835G4449_RS14845
Partner old locus tags
G4449_14865G4449_14870G4449_14880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118611207.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4449_RS14845Primary locus identifier stored in the genes table.
Old locus tagG4449_14880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOY010000057.1Sequence record reported by the local genomic context database.
Genomic interval8 438-9 937 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 045-9 937 ntGCF_013301765::NZ_JAAIOY010000057.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301765::NZ_JAAIOY010000057.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOY010000057.1All displayed genes belong to this local TCS context.
Neighborhood span3 045-9 937 nt6 893 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 045 nt9 937 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G4449_RS14830GCF_013301765#G4449_RS14830
HKHybrid
3 045-5 195 nt · Forward (+)
G4449_RS14835GCF_013301765#G4449_RS14835
HKHybrid
5 278-8 106 nt · Forward (+)
G4449_RS14845GCF_013301765#G4449_RS14845
RRRpfGCurrent focus
8 438-9 937 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS14455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0159370
Simplified PFAM architecture for RROC_0159370
PFAM domain coverage: 246 / 499 aa (49.3%)
1 aa499 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[186-320]
- Domain count: 2
- Matched identifier: RROC_0159370
- Positioned domains: Response_reg 7-117 ; HD_5 186-320
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS14455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301765
AssemblyASM1330176v1 · Contighaploid
Genome composition4 097 873 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key