1 Response_reg#1
6-94 aa · 89 aa · 92.7% of protein
Raw token
Response_reg:6:0.000000265:94:89:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4449_RS14815
Response regulator, CheY family
Blautia wexlerae · GCF_013301765
ClassRRTypeCheYLength96 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301765#G4449_RS14815Stable P2CS identifier used across views.
GenomeGCF_013301765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length96 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage89 / 96 aa (92.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa96 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.000000265:94:89:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301765::NZ_JAAIOY010000056.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26665-26953Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4449_14850RefSeq proteinWP_173684700.1
Context group ID
GCF_013301765::NZ_JAAIOY010000056.1::G00047Context members
G4449_RS14815
Partner locus tags
G4449_RS14815
Partner old locus tags
G4449_14850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173684700.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4449_RS14815Primary locus identifier stored in the genes table.
Old locus tagG4449_14850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOY010000056.1Sequence record reported by the local genomic context database.
Genomic interval26 665-26 953 nt289 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 665-26 953 ntGCF_013301765::NZ_JAAIOY010000056.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301765::NZ_JAAIOY010000056.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOY010000056.1All displayed genes belong to this local TCS context.
Neighborhood span26 665-26 953 nt289 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 665 nt26 953 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4449_RS14815GCF_013301765#G4449_RS14815
RRCheYCurrent focus
26 665-26 953 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039753435#ABHS82_RS11475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0900045
Simplified PFAM architecture for RROC_0900045
PFAM domain coverage: 199 / 240 aa (82.9%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[144-231]
- Domain count: 2
- Matched identifier: RROC_0900045
- Positioned domains: Response_reg 6-116 ; LytTR 144-231
Cluster members and taxonomy
Representative gene: GCF_039753435#ABHS82_RS11475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301765
AssemblyASM1330176v1 · Contighaploid
Genome composition4 097 873 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key