1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:5.9e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4449_RS12945
Response regulator OmpR family
Blautia wexlerae · GCF_013301765
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301765#G4449_RS12945Stable P2CS identifier used across views.
GenomeGCF_013301765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:149:9.29e-21:224:77:77- Raw architecture: Response_reg:5:5.9e-33:114:111:111#Trans_reg_C:149:9.29e-21:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301765::NZ_JAAIOY010000043.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30508-32350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4449_12950RefSeq proteinWP_117845779.1
Context group ID
GCF_013301765::NZ_JAAIOY010000043.1::G00042Context members
G4449_RS12940G4449_RS12945
Partner locus tags
G4449_RS12940G4449_RS12945
Partner old locus tags
G4449_12945G4449_12950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117845779.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4449_RS12945Primary locus identifier stored in the genes table.
Old locus tagG4449_12950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOY010000043.1Sequence record reported by the local genomic context database.
Genomic interval31 661-32 350 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 508-32 350 ntGCF_013301765::NZ_JAAIOY010000043.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301765::NZ_JAAIOY010000043.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOY010000043.1All displayed genes belong to this local TCS context.
Neighborhood span30 508-32 350 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 508 nt32 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4449_RS12940GCF_013301765#G4449_RS12940
HKClassic
30 508-31 620 nt · Reverse (-)
G4449_RS12945GCF_013301765#G4449_RS12945
RROmpRCurrent focus
31 661-32 350 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS12795Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1268069
Simplified PFAM architecture for RROC_1268069
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-224]
- Domain count: 2
- Matched identifier: RROC_1268069
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 150-224
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS12795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301765
AssemblyASM1330176v1 · Contighaploid
Genome composition4 097 873 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key