1 Response_reg#1
3-113 aa · 111 aa · 50.0% of protein
Raw token
Response_reg:3:5.9e-41:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4449_RS11170
Response regulator OmpR family
Blautia wexlerae · GCF_013301765
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301765#G4449_RS11170Stable P2CS identifier used across views.
GenomeGCF_013301765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 222 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:145:1.14e-22:220:78:77- Raw architecture: Response_reg:3:5.9e-41:113:111:111#Trans_reg_C:145:1.14e-22:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301765::NZ_JAAIOY010000033.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9384-11220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4449_11185RefSeq proteinWP_173684578.1
Context group ID
GCF_013301765::NZ_JAAIOY010000033.1::G00029Context members
G4449_RS11165G4449_RS11170
Partner locus tags
G4449_RS11165G4449_RS11170
Partner old locus tags
G4449_11180G4449_11185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173684578.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4449_RS11170Primary locus identifier stored in the genes table.
Old locus tagG4449_11185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOY010000033.1Sequence record reported by the local genomic context database.
Genomic interval10 552-11 220 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 384-11 220 ntGCF_013301765::NZ_JAAIOY010000033.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301765::NZ_JAAIOY010000033.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOY010000033.1All displayed genes belong to this local TCS context.
Neighborhood span9 384-11 220 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 384 nt11 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4449_RS11165GCF_013301765#G4449_RS11165
HKClassic
9 384-10 547 nt · Reverse (-)
G4449_RS11170GCF_013301765#G4449_RS11170
RROmpRCurrent focus
10 552-11 220 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS10720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1651705
Simplified PFAM architecture for RROC_1651705
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1651705
- Positioned domains: Response_reg 3-113 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS10720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301765
AssemblyASM1330176v1 · Contighaploid
Genome composition4 097 873 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key