1 sCache_like#1
35-129 aa · 95 aa · 17.1% of protein
Raw token
sCache_like:35:0.000000000584:129:102:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4449_RS10145
Histidine kinase, Classic
Blautia wexlerae · GCF_013301765
ClassHKTypeClassicLength555 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301765#G4449_RS10145Stable P2CS identifier used across views.
GenomeGCF_013301765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_8HisKAHATPase_c
Protein length555 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage304 / 555 aa (54.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa555 aa
Domain-by-domain annotation4 items
2 PAS_8#2
224-258 aa · 35 aa · 6.3% of protein
Raw token
PAS_8:224:0.0000569:258:35:653 HisKA#3
332-397 aa · 66 aa · 11.9% of protein
Raw token
HisKA:332:1.91e-18:397:66:644 HATPase_c#4
443-550 aa · 108 aa · 19.5% of protein
Raw token
HATPase_c:443:9.82e-29:550:108:109- Raw architecture: sCache_like:35:0.000000000584:129:102:114#PAS_8:224:0.0000569:258:35:65#HisKA:332:1.91e-18:397:66:64#HATPase_c:443:9.82e-29:550:108:109
- Domain description: 1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301765::NZ_JAAIOY010000028.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span21948-23615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4449_10155RefSeq proteinWP_243871161.1
Context group ID
GCF_013301765::NZ_JAAIOY010000028.1::G00020Context members
G4449_RS10145
Partner locus tags
G4449_RS10145
Partner old locus tags
G4449_10155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243871161.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4449_RS10145Primary locus identifier stored in the genes table.
Old locus tagG4449_10155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOY010000028.1Sequence record reported by the local genomic context database.
Genomic interval21 948-23 615 nt1 668 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 948-23 615 ntGCF_013301765::NZ_JAAIOY010000028.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301765::NZ_JAAIOY010000028.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOY010000028.1All displayed genes belong to this local TCS context.
Neighborhood span21 948-23 615 nt1 668 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 948 nt23 615 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4449_RS10145GCF_013301765#G4449_RS10145
HKClassicCurrent focus
21 948-23 615 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS09735Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1278686
Simplified PFAM architecture for HKOC_1278686
PFAM domain coverage: 268 / 555 aa (48.3%)
1 aa555 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[35-129] | HisKA[332-396] | HATPase_c[444-551]
- Domain count: 3
- Matched identifier: HKOC_1278686
- Positioned domains: sCache_like 35-129 ; HisKA 332-396 ; HATPase_c 444-551
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS09735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301765
AssemblyASM1330176v1 · Contighaploid
Genome composition4 097 873 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key