1 HAMP#1
198-265 aa · 68 aa · 13.2% of protein
Raw token
HAMP:198:0.00000000000000193:265:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4449_RS09225
Histidine kinase, Classic
Blautia wexlerae · GCF_013301765
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301765#G4449_RS09225Stable P2CS identifier used across views.
GenomeGCF_013301765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 514 aa (47.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation3 items
2 HisKA#2
291-358 aa · 68 aa · 13.2% of protein
Raw token
HisKA:291:0.00000000000000147:358:68:643 HATPase_c#3
403-511 aa · 109 aa · 21.2% of protein
Raw token
HATPase_c:403:1.76e-19:511:110:109- Raw architecture: HAMP:198:0.00000000000000193:265:68:69#HisKA:291:0.00000000000000147:358:68:64#HATPase_c:403:1.76e-19:511:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301765::NZ_JAAIOY010000024.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26174-28395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4449_09235RefSeq proteinWP_173684566.1
Context group ID
GCF_013301765::NZ_JAAIOY010000024.1::G00017Context members
G4449_RS09225G4449_RS09230
Partner locus tags
G4449_RS09225G4449_RS09230
Partner old locus tags
G4449_09235G4449_09240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173684566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4449_RS09225Primary locus identifier stored in the genes table.
Old locus tagG4449_09235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOY010000024.1Sequence record reported by the local genomic context database.
Genomic interval26 174-27 718 nt1 545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 174-28 395 ntGCF_013301765::NZ_JAAIOY010000024.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301765::NZ_JAAIOY010000024.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOY010000024.1All displayed genes belong to this local TCS context.
Neighborhood span26 174-28 395 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 174 nt28 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4449_RS09225GCF_013301765#G4449_RS09225
HKClassicCurrent focus
26 174-27 718 nt · Reverse (-)
G4449_RS09230GCF_013301765#G4449_RS09230
RROmpR
27 715-28 395 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS08760Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1412580
Simplified PFAM architecture for HKOC_1412580
PFAM domain coverage: 228 / 514 aa (44.4%)
1 aa514 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[215-265] | HisKA[291-358] | HATPase_c[404-512]
- Domain count: 3
- Matched identifier: HKOC_1412580
- Positioned domains: HAMP 215-265 ; HisKA 291-358 ; HATPase_c 404-512
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS08760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301765
AssemblyASM1330176v1 · Contighaploid
Genome composition4 097 873 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key