1 Response_reg#1
5-117 aa · 113 aa · 20.6% of protein
Raw token
Response_reg:5:9.72e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4492_RS08070
Response regulator, unclassified
Blautia wexlerae · GCF_013301745
ClassRRTypeunclassifiedLength548 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301745#G4492_RS08070Stable P2CS identifier used across views.
GenomeGCF_013301745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length548 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 548 aa (33.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa548 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
456-493 aa · 38 aa · 6.9% of protein
Raw token
HTH_AraC:456:0.00000087:493:38:423 HTH_AraC#3
513-543 aa · 31 aa · 5.7% of protein
Raw token
HTH_AraC:513:0.0000000926:543:31:42- Raw architecture: Response_reg:5:9.72e-30:117:113:111#HTH_AraC:456:0.00000087:493:38:42#HTH_AraC:513:0.0000000926:543:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301745::NZ_JAAIOW010000025.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5331-8477Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4492_08125RefSeq proteinWP_118568985.1
Context group ID
GCF_013301745::NZ_JAAIOW010000025.1::G00030Context members
G4492_RS08065G4492_RS08070
Partner locus tags
G4492_RS08065G4492_RS08070
Partner old locus tags
G4492_08120G4492_08125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118568985.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4492_RS08070Primary locus identifier stored in the genes table.
Old locus tagG4492_08125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOW010000025.1Sequence record reported by the local genomic context database.
Genomic interval6 831-8 477 nt1 647 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 331-8 477 ntGCF_013301745::NZ_JAAIOW010000025.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301745::NZ_JAAIOW010000025.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOW010000025.1All displayed genes belong to this local TCS context.
Neighborhood span5 331-8 477 nt3 147 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 331 nt8 477 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4492_RS08065GCF_013301745#G4492_RS08065
HKClassic
5 331-6 827 nt · Reverse (-)
G4492_RS08070GCF_013301745#G4492_RS08070
RRunclassifiedCurrent focus
6 831-8 477 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS09785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0076951
Simplified PFAM architecture for RROC_0076951
PFAM domain coverage: 319 / 548 aa (58.2%)
1 aa548 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-116] | GGDEF_2[163-291] | HTH_18[466-543]
- Domain count: 3
- Matched identifier: RROC_0076951
- Positioned domains: Response_reg 5-116 ; GGDEF_2 163-291 ; HTH_18 466-543
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS09785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301745
AssemblyASM1330174v1 · Contighaploid
Genome composition4 070 027 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key