1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:1.14e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4459_RS13915
Response regulator, unclassified
Blautia wexlerae · GCF_013301645
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301645#G4459_RS13915Stable P2CS identifier used across views.
GenomeGCF_013301645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 539 aa (28.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
443-482 aa · 40 aa · 7.4% of protein
Raw token
HTH_AraC:443:0.0000222:482:40:42- Raw architecture: Response_reg:4:1.14e-26:117:114:111#HTH_AraC:443:0.0000222:482:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301645::NZ_JAAIOS010000053.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10826-14247Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4459_13865RefSeq proteinWP_118521268.1
Context group ID
GCF_013301645::NZ_JAAIOS010000053.1::G00043Context members
G4459_RS13915G4459_RS13920
Partner locus tags
G4459_RS13915G4459_RS13920
Partner old locus tags
G4459_13865G4459_13870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118521268.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4459_RS13915Primary locus identifier stored in the genes table.
Old locus tagG4459_13865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOS010000053.1Sequence record reported by the local genomic context database.
Genomic interval10 826-12 445 nt1 620 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 826-14 247 ntGCF_013301645::NZ_JAAIOS010000053.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301645::NZ_JAAIOS010000053.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOS010000053.1All displayed genes belong to this local TCS context.
Neighborhood span10 826-14 247 nt3 422 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 826 nt14 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4459_RS13915GCF_013301645#G4459_RS13915
RRunclassifiedCurrent focus
10 826-12 445 nt · Forward (+)
G4459_RS13920GCF_013301645#G4459_RS13920
HKClassic
12 442-14 247 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS15735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0092438
Simplified PFAM architecture for RROC_0092438
PFAM domain coverage: 318 / 539 aa (59.0%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[173-299] | HTH_18[458-535]
- Domain count: 3
- Matched identifier: RROC_0092438
- Positioned domains: Response_reg 4-116 ; GGDEF_2 173-299 ; HTH_18 458-535
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS15735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301645
AssemblyASM1330164v1 · Contighaploid
Genome composition4 078 636 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 126 · HK 63 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key