1 Response_reg#1
3-113 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:3:3.24e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4459_RS09845
Response regulator OmpR family
Blautia wexlerae · GCF_013301645
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301645#G4459_RS09845Stable P2CS identifier used across views.
GenomeGCF_013301645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:146:3.95e-23:221:77:77- Raw architecture: Response_reg:3:3.24e-37:113:111:111#Trans_reg_C:146:3.95e-23:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301645::NZ_JAAIOS010000028.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4070-4741Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4459_09815RefSeq proteinWP_118331613.1
Context group ID
GCF_013301645::NZ_JAAIOS010000028.1::G00025Context members
G4459_RS09845
Partner locus tags
G4459_RS09845
Partner old locus tags
G4459_09815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118331613.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4459_RS09845Primary locus identifier stored in the genes table.
Old locus tagG4459_09815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOS010000028.1Sequence record reported by the local genomic context database.
Genomic interval4 070-4 741 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 070-4 741 ntGCF_013301645::NZ_JAAIOS010000028.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301645::NZ_JAAIOS010000028.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOS010000028.1All displayed genes belong to this local TCS context.
Neighborhood span4 070-4 741 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 070 nt4 741 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4459_RS09845GCF_013301645#G4459_RS09845
RROmpRCurrent focus
4 070-4 741 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS10115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1606175
Simplified PFAM architecture for RROC_1606175
PFAM domain coverage: 187 / 223 aa (83.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1606175
- Positioned domains: Response_reg 3-113 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS10115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301645
AssemblyASM1330164v1 · Contighaploid
Genome composition4 078 636 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 126 · HK 63 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key