1 Response_reg#1
4-120 aa · 117 aa · 47.8% of protein
Raw token
Response_reg:4:2.45e-20:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4459_RS06535
Response regulator LytTR family
Blautia wexlerae · GCF_013301645
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301645#G4459_RS06535Stable P2CS identifier used across views.
GenomeGCF_013301645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 245 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-226 aa · 83 aa · 33.9% of protein
Raw token
LytTR:144:3.83e-17:226:92:98- Raw architecture: Response_reg:4:2.45e-20:120:119:111#LytTR:144:3.83e-17:226:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301645::NZ_JAAIOS010000015.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22382-23119Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4459_06510RefSeq proteinWP_008707876.1
Context group ID
GCF_013301645::NZ_JAAIOS010000015.1::G00013Context members
G4459_RS06535
Partner locus tags
G4459_RS06535
Partner old locus tags
G4459_06510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008707876.1Primary protein accession used for annex mappings.
UniProt accessionA0A174EYU8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174EYU8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4459_RS06535Primary locus identifier stored in the genes table.
Old locus tagG4459_06510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOS010000015.1Sequence record reported by the local genomic context database.
Genomic interval22 382-23 119 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 382-23 119 ntGCF_013301645::NZ_JAAIOS010000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301645::NZ_JAAIOS010000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOS010000015.1All displayed genes belong to this local TCS context.
Neighborhood span22 382-23 119 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 382 nt23 119 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4459_RS06535GCF_013301645#G4459_RS06535
RRLytTRCurrent focus
22 382-23 119 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0111740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0790291
Simplified PFAM architecture for RROC_0790291
PFAM domain coverage: 179 / 245 aa (73.1%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[144-206]
- Domain count: 2
- Matched identifier: RROC_0790291
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 144-206 ; LytTR 144-206
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0111740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301645
AssemblyASM1330164v1 · Contighaploid
Genome composition4 078 636 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 126 · HK 63 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key