1 Response_reg#1
4-96 aa · 93 aa · 36.3% of protein
Raw token
Response_reg:4:0.0000000000000129:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4360_RS10100
Response regulator, FrzZ family
Coprococcus comes · GCF_013301515
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301515#G4360_RS10100Stable P2CS identifier used across views.
GenomeGCF_013301515Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage213 / 256 aa (83.2%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 Response_reg#2
132-251 aa · 120 aa · 46.9% of protein
Raw token
Response_reg:132:0.0000000653:251:120:111- Raw architecture: Response_reg:4:0.0000000000000129:96:93:111#Response_reg:132:0.0000000653:251:120:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301515::NZ_JAAIOM010000014.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span59580-60350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4360_10100RefSeq proteinWP_071144301.1
Context group ID
GCF_013301515::NZ_JAAIOM010000014.1::G00011Context members
G4360_RS10100
Partner locus tags
G4360_RS10100
Partner old locus tags
G4360_10100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071144301.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4360_RS10100Primary locus identifier stored in the genes table.
Old locus tagG4360_10100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOM010000014.1Sequence record reported by the local genomic context database.
Genomic interval59 580-60 350 nt771 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 580-60 350 ntGCF_013301515::NZ_JAAIOM010000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301515::NZ_JAAIOM010000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOM010000014.1All displayed genes belong to this local TCS context.
Neighborhood span59 580-60 350 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 580 nt60 350 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4360_RS10100GCF_013301515#G4360_RS10100
RRFrzZCurrent focus
59 580-60 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS10200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0675662
Simplified PFAM architecture for RROC_0675662
PFAM domain coverage: 99 / 256 aa (38.7%)
1 aa256 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-102]
- Domain count: 1
- Matched identifier: RROC_0675662
- Positioned domains: Response_reg 4-102
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS10200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301515
AssemblyASM1330151v1 · Contighaploid
Genome composition3 188 316 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key