1 HisKA#1
244-309 aa · 66 aa · 10.7% of protein
Raw token
HisKA:244:3.71e-19:309:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4360_RS08375
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301515
ClassHKTypeHybridLength617 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301515#G4360_RS08375Stable P2CS identifier used across views.
GenomeGCF_013301515Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 617 aa (48.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
356-472 aa · 117 aa · 19.0% of protein
Raw token
HATPase_c:356:3.57e-30:472:118:1093 Response_reg#3
496-612 aa · 117 aa · 19.0% of protein
Raw token
Response_reg:496:2.86e-28:612:117:111- Raw architecture: HisKA:244:3.71e-19:309:66:64#HATPase_c:356:3.57e-30:472:118:109#Response_reg:496:2.86e-28:612:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301515::NZ_JAAIOM010000010.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46575-48428Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4360_08355RefSeq proteinWP_173823515.1
Context group ID
GCF_013301515::NZ_JAAIOM010000010.1::G00001Context members
G4360_RS08375
Partner locus tags
G4360_RS08375
Partner old locus tags
G4360_08355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173823515.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4360_RS08375Primary locus identifier stored in the genes table.
Old locus tagG4360_08355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOM010000010.1Sequence record reported by the local genomic context database.
Genomic interval46 575-48 428 nt1 854 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 575-48 428 ntGCF_013301515::NZ_JAAIOM010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301515::NZ_JAAIOM010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOM010000010.1All displayed genes belong to this local TCS context.
Neighborhood span46 575-48 428 nt1 854 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 575 nt48 428 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4360_RS08375GCF_013301515#G4360_RS08375
HKHybridCurrent focus
46 575-48 428 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09465Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0953744
Simplified PFAM architecture for HKOC_0953744
PFAM domain coverage: 299 / 628 aa (47.6%)
1 aa628 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[255-320] | HATPase_c[367-482] | Response_reg[507-623]
- Domain count: 3
- Matched identifier: HKOC_0953744
- Positioned domains: HisKA 255-320 ; HATPase_c 367-482 ; Response_reg 507-623
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301515
AssemblyASM1330151v1 · Contighaploid
Genome composition3 188 316 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key