1 HisKA#1
43-94 aa · 52 aa · 20.8% of protein
Raw token
HisKA:43:0.00000506:94:52:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4360_RS07940
Histidine kinase, Classic
Coprococcus comes · GCF_013301515
ClassHKTypeClassicLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301515#G4360_RS07940Stable P2CS identifier used across views.
GenomeGCF_013301515Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 250 aa (63.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
145-250 aa · 106 aa · 42.4% of protein
Raw token
HATPase_c:145:1.47e-29:250:109:109- Raw architecture: HisKA:43:0.00000506:94:52:64#HATPase_c:145:1.47e-29:250:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301515::NZ_JAAIOM010000009.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72308-73060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4360_07915RefSeq proteinWP_173690375.1
Context group ID
GCF_013301515::NZ_JAAIOM010000009.1::G00051Context members
G4360_RS07940
Partner locus tags
G4360_RS07940
Partner old locus tags
G4360_07915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690375.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4360_RS07940Primary locus identifier stored in the genes table.
Old locus tagG4360_07915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOM010000009.1Sequence record reported by the local genomic context database.
Genomic interval72 308-73 060 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 308-73 060 ntGCF_013301515::NZ_JAAIOM010000009.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301515::NZ_JAAIOM010000009.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOM010000009.1All displayed genes belong to this local TCS context.
Neighborhood span72 308-73 060 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 308 nt73 060 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4360_RS07940GCF_013301515#G4360_RS07940
HKClassicCurrent focus
72 308-73 060 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300745#G4350_RS08325Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2919143
Simplified PFAM architecture for HKOC_2919143
PFAM domain coverage: 104 / 250 aa (41.6%)
1 aa250 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[146-249]
- Domain count: 1
- Matched identifier: HKOC_2919143
- Positioned domains: HATPase_c 146-249
Cluster members and taxonomy
Representative gene: GCF_013300745#G4350_RS08325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301515
AssemblyASM1330151v1 · Contighaploid
Genome composition3 188 316 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key