1 HisKA#1
85-146 aa · 62 aa · 20.5% of protein
Raw token
HisKA:85:0.0000000000192:146:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4451_RS08055
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013301135
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301135#G4451_RS08055Stable P2CS identifier used across views.
GenomeGCF_013301135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 302 aa (56.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-297 aa · 107 aa · 35.4% of protein
Raw token
HATPase_c:191:1.72e-27:297:107:109- Raw architecture: HisKA:85:0.0000000000192:146:62:64#HATPase_c:191:1.72e-27:297:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301135::NZ_JAAINX010000009.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7035-8623Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4451_08100RefSeq proteinWP_055265586.1
Context group ID
GCF_013301135::NZ_JAAINX010000009.1::G00051Context members
G4451_RS08055G4451_RS08060
Partner locus tags
G4451_RS08055G4451_RS08060
Partner old locus tags
G4451_08100G4451_08105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055265586.1Primary protein accession used for annex mappings.
UniProt accessionA0A174IRZ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174IRZ9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4451_RS08055Primary locus identifier stored in the genes table.
Old locus tagG4451_08100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINX010000009.1Sequence record reported by the local genomic context database.
Genomic interval7 035-7 943 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 035-8 623 ntGCF_013301135::NZ_JAAINX010000009.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301135::NZ_JAAINX010000009.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINX010000009.1All displayed genes belong to this local TCS context.
Neighborhood span7 035-8 623 nt1 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 035 nt8 623 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4451_RS08055GCF_013301135#G4451_RS08055
HKClassicCurrent focus
7 035-7 943 nt · Reverse (-)
G4451_RS08060GCF_013301135#G4451_RS08060
RROmpR
7 940-8 623 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS03655Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884793
Simplified PFAM architecture for HKOC_2884793
PFAM domain coverage: 170 / 302 aa (56.3%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-146] | HATPase_c[191-298]
- Domain count: 2
- Matched identifier: HKOC_2884793
- Positioned domains: HisKA 85-146 ; HATPase_c 191-298
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS03655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301135
AssemblyASM1330113v1 · Contighaploid
Genome composition3 904 794 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 89 · HK 47 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key