1 His_kinase#1
389-463 aa · 75 aa · 12.1% of protein
Raw token
His_kinase:389:6.98e-27:463:75:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4451_RS04925
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013301135
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301135#G4451_RS04925Stable P2CS identifier used across views.
GenomeGCF_013301135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 621 aa (29.6%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
486-594 aa · 109 aa · 17.6% of protein
Raw token
HATPase_c:486:0.000000000201:594:109:109- Raw architecture: His_kinase:389:6.98e-27:463:75:80#HATPase_c:486:0.000000000201:594:109:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301135::NZ_JAAINX010000005.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88717-92002Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4451_04945RefSeq proteinWP_173841205.1
Context group ID
GCF_013301135::NZ_JAAINX010000005.1::G00042Context members
G4451_RS04920G4451_RS04925
Partner locus tags
G4451_RS04920G4451_RS04925
Partner old locus tags
G4451_04940G4451_04945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173841205.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4451_RS04925Primary locus identifier stored in the genes table.
Old locus tagG4451_04945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINX010000005.1Sequence record reported by the local genomic context database.
Genomic interval90 137-92 002 nt1 866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 717-92 002 ntGCF_013301135::NZ_JAAINX010000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301135::NZ_JAAINX010000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINX010000005.1All displayed genes belong to this local TCS context.
Neighborhood span88 717-92 002 nt3 286 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 717 nt92 002 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4451_RS04920GCF_013301135#G4451_RS04920
RRunclassified
88 717-90 165 nt · Reverse (-)
G4451_RS04925GCF_013301135#G4451_RS04925
HKClassicCurrent focus
90 137-92 002 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301135#G4451_RS04925The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0971047
Simplified PFAM architecture for HKOC_0971047
PFAM domain coverage: 184 / 621 aa (29.6%)
1 aa621 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[389-463] | HATPase_c[485-593]
- Domain count: 2
- Matched identifier: HKOC_0971047
- Positioned domains: His_kinase 389-463 ; HATPase_c 485-593
Cluster members and taxonomy
Representative gene: GCF_013301135#G4451_RS04925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301135
AssemblyASM1330113v1 · Contighaploid
Genome composition3 904 794 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 89 · HK 47 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key