1 Response_reg#1
7-116 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:7:3.3e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4451_RS02570
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013301135
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301135#G4451_RS02570Stable P2CS identifier used across views.
GenomeGCF_013301135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-230 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:156:1.64e-34:230:77:77- Raw architecture: Response_reg:7:3.3e-37:116:111:111#Trans_reg_C:156:1.64e-34:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301135::NZ_JAAINX010000003.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38817-40939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4451_02585RefSeq proteinWP_118697660.1
Context group ID
GCF_013301135::NZ_JAAINX010000003.1::G00036Context members
G4451_RS02570G4451_RS02575
Partner locus tags
G4451_RS02570G4451_RS02575
Partner old locus tags
G4451_02585G4451_02590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118697660.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4451_RS02570Primary locus identifier stored in the genes table.
Old locus tagG4451_02585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINX010000003.1Sequence record reported by the local genomic context database.
Genomic interval38 817-39 521 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 817-40 939 ntGCF_013301135::NZ_JAAINX010000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301135::NZ_JAAINX010000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINX010000003.1All displayed genes belong to this local TCS context.
Neighborhood span38 817-40 939 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 817 nt40 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4451_RS02570GCF_013301135#G4451_RS02570
RROmpRCurrent focus
38 817-39 521 nt · Forward (+)
G4451_RS02575GCF_013301135#G4451_RS02575
HKClassic
39 521-40 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480245#DW915_RS03990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055623
Simplified PFAM architecture for RROC_1055623
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_1055623
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 156-230 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_003480245#DW915_RS03990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301135
AssemblyASM1330113v1 · Contighaploid
Genome composition3 904 794 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 89 · HK 47 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key