1 Response_reg#1
5-117 aa · 113 aa · 23.4% of protein
Raw token
Response_reg:5:7.38e-32:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B02_RS10600
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013301115
ClassRRTypeunclassifiedLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301115#G5B02_RS10600Stable P2CS identifier used across views.
GenomeGCF_013301115Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 482 aa (40.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
377-418 aa · 42 aa · 8.7% of protein
Raw token
HTH_AraC:377:0.00000123:418:42:423 HTH_AraC#3
430-468 aa · 39 aa · 8.1% of protein
Raw token
HTH_AraC:430:0.000000119:468:39:42- Raw architecture: Response_reg:5:7.38e-32:117:113:111#HTH_AraC:377:0.00000123:418:42:42#HTH_AraC:430:0.000000119:468:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301115::NZ_JAAITR010000012.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36132-39417Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B02_10630RefSeq proteinWP_173816288.1
Context group ID
GCF_013301115::NZ_JAAITR010000012.1::G00002Context members
G5B02_RS10595G5B02_RS10600
Partner locus tags
G5B02_RS10595G5B02_RS10600
Partner old locus tags
G5B02_10625G5B02_10630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173816288.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B02_RS10600Primary locus identifier stored in the genes table.
Old locus tagG5B02_10630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITR010000012.1Sequence record reported by the local genomic context database.
Genomic interval37 969-39 417 nt1 449 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 132-39 417 ntGCF_013301115::NZ_JAAITR010000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301115::NZ_JAAITR010000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITR010000012.1All displayed genes belong to this local TCS context.
Neighborhood span36 132-39 417 nt3 286 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 132 nt39 417 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B02_RS10595GCF_013301115#G5B02_RS10595
HKClassic
36 132-37 997 nt · Forward (+)
G5B02_RS10600GCF_013301115#G5B02_RS10600
RRunclassifiedCurrent focus
37 969-39 417 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301115#G5B02_RS10600The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0179924
Simplified PFAM architecture for RROC_0179924
PFAM domain coverage: 190 / 482 aa (39.4%)
1 aa482 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[391-468]
- Domain count: 2
- Matched identifier: RROC_0179924
- Positioned domains: Response_reg 5-116 ; HTH_18 391-468
Cluster members and taxonomy
Representative gene: GCF_013301115#G5B02_RS10600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301115
AssemblyASM1330111v1 · Contighaploid
Genome composition3 883 417 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 85 · HK 45 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key