1 Response_reg#1
4-115 aa · 112 aa · 21.3% of protein
Raw token
Response_reg:4:8.25e-24:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B02_RS05085
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013301115
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301115#G5B02_RS05085Stable P2CS identifier used across views.
GenomeGCF_013301115Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 527 aa (28.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.00000000139:525:37:42- Raw architecture: Response_reg:4:8.25e-24:115:112:111#HTH_AraC:489:0.00000000139:525:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301115::NZ_JAAITR010000005.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6526-8109Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B02_05115RefSeq proteinWP_173815990.1
Context group ID
GCF_013301115::NZ_JAAITR010000005.1::G00041Context members
G5B02_RS05085
Partner locus tags
G5B02_RS05085
Partner old locus tags
G5B02_05115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B02_RS05085Primary locus identifier stored in the genes table.
Old locus tagG5B02_05115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITR010000005.1Sequence record reported by the local genomic context database.
Genomic interval6 526-8 109 nt1 584 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 526-8 109 ntGCF_013301115::NZ_JAAITR010000005.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301115::NZ_JAAITR010000005.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITR010000005.1All displayed genes belong to this local TCS context.
Neighborhood span6 526-8 109 nt1 584 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 526 nt8 109 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5B02_RS05085GCF_013301115#G5B02_RS05085
RRunclassifiedCurrent focus
6 526-8 109 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301115#G5B02_RS05085The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116465
Simplified PFAM architecture for RROC_0116465
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[447-525]
- Domain count: 2
- Matched identifier: RROC_0116465
- Positioned domains: Response_reg 4-115 ; HTH_18 447-525
Cluster members and taxonomy
Representative gene: GCF_013301115#G5B02_RS05085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301115
AssemblyASM1330111v1 · Contighaploid
Genome composition3 883 417 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 85 · HK 45 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key