1 HAMP#1
262-331 aa · 70 aa · 12.7% of protein
Raw token
HAMP:262:0.000000000000819:331:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B02_RS03690
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013301115
ClassHKTypeClassicLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301115#G5B02_RS03690Stable P2CS identifier used across views.
GenomeGCF_013301115Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 550 aa (47.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 His_kinase#2
347-426 aa · 80 aa · 14.5% of protein
Raw token
His_kinase:347:2.7e-21:426:80:803 HATPase_c#3
437-545 aa · 109 aa · 19.8% of protein
Raw token
HATPase_c:437:0.000000000208:545:114:109- Raw architecture: HAMP:262:0.000000000000819:331:70:69#His_kinase:347:2.7e-21:426:80:80#HATPase_c:437:0.000000000208:545:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301115::NZ_JAAITR010000003.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span143829-146232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B02_03705RefSeq proteinWP_118600735.1
Context group ID
GCF_013301115::NZ_JAAITR010000003.1::G00034Context members
G5B02_RS03685G5B02_RS03690
Partner locus tags
G5B02_RS03685G5B02_RS03690
Partner old locus tags
G5B02_03700G5B02_03705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118600735.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B02_RS03690Primary locus identifier stored in the genes table.
Old locus tagG5B02_03705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITR010000003.1Sequence record reported by the local genomic context database.
Genomic interval144 580-146 232 nt1 653 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 829-146 232 ntGCF_013301115::NZ_JAAITR010000003.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301115::NZ_JAAITR010000003.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITR010000003.1All displayed genes belong to this local TCS context.
Neighborhood span143 829-146 232 nt2 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 829 nt146 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B02_RS03685GCF_013301115#G5B02_RS03685
RRunclassified
143 829-144 563 nt · Reverse (-)
G5B02_RS03690GCF_013301115#G5B02_RS03690
HKClassicCurrent focus
144 580-146 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS02575Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1293121
Simplified PFAM architecture for HKOC_1293121
PFAM domain coverage: 236 / 550 aa (42.9%)
1 aa550 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[282-331] | His_kinase[348-425] | HATPase_c[438-545]
- Domain count: 3
- Matched identifier: HKOC_1293121
- Positioned domains: HAMP 282-331 ; His_kinase 348-425 ; HATPase_c 438-545
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS02575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301115
AssemblyASM1330111v1 · Contighaploid
Genome composition3 883 417 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 85 · HK 45 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key