1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:2.33e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4431_RS06005
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013301065
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301065#G4431_RS06005Stable P2CS identifier used across views.
GenomeGCF_013301065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-222 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:146:5.84e-32:222:77:77- Raw architecture: Response_reg:3:2.33e-30:112:111:111#Trans_reg_C:146:5.84e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301065::NZ_JAAINV010000006.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13689-14372Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4431_06015RefSeq proteinWP_118719902.1
Context group ID
GCF_013301065::NZ_JAAINV010000006.1::G00055Context members
G4431_RS06005
Partner locus tags
G4431_RS06005
Partner old locus tags
G4431_06015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118719902.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4431_RS06005Primary locus identifier stored in the genes table.
Old locus tagG4431_06015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINV010000006.1Sequence record reported by the local genomic context database.
Genomic interval13 689-14 372 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 689-14 372 ntGCF_013301065::NZ_JAAINV010000006.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301065::NZ_JAAINV010000006.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINV010000006.1All displayed genes belong to this local TCS context.
Neighborhood span13 689-14 372 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 689 nt14 372 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4431_RS06005GCF_013301065#G4431_RS06005
RROmpRCurrent focus
13 689-14 372 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS08980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366950
Simplified PFAM architecture for RROC_1366950
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1366950
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS08980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301065
AssemblyASM1330106v1 · Contighaploid
Genome composition3 642 405 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key