1 HAMP#1
64-132 aa · 69 aa · 18.3% of protein
Raw token
HAMP:64:0.0000000000016:132:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4437_RS15330
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013301005
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301005#G4437_RS15330Stable P2CS identifier used across views.
GenomeGCF_013301005Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 377 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation3 items
2 HisKA#2
144-209 aa · 66 aa · 17.5% of protein
Raw token
HisKA:144:0.00000000000131:209:66:643 HATPase_c#3
256-365 aa · 110 aa · 29.2% of protein
Raw token
HATPase_c:256:1.67e-28:365:111:109- Raw architecture: HAMP:64:0.0000000000016:132:69:69#HisKA:144:0.00000000000131:209:66:64#HATPase_c:256:1.67e-28:365:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301005::NZ_JAAINR010000041.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5042-6863Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4437_15380RefSeq proteinWP_055228565.1
Context group ID
GCF_013301005::NZ_JAAINR010000041.1::G00042Context members
G4437_RS15325G4437_RS15330
Partner locus tags
G4437_RS15325G4437_RS15330
Partner old locus tags
G4437_15375G4437_15380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055228565.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4437_RS15330Primary locus identifier stored in the genes table.
Old locus tagG4437_15380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINR010000041.1Sequence record reported by the local genomic context database.
Genomic interval5 730-6 863 nt1 134 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 042-6 863 ntGCF_013301005::NZ_JAAINR010000041.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301005::NZ_JAAINR010000041.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINR010000041.1All displayed genes belong to this local TCS context.
Neighborhood span5 042-6 863 nt1 822 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 042 nt6 863 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4437_RS15325GCF_013301005#G4437_RS15325
RROmpR
5 042-5 740 nt · Forward (+)
G4437_RS15330GCF_013301005#G4437_RS15330
HKClassicCurrent focus
5 730-6 863 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS15140Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634766
Simplified PFAM architecture for HKOC_2634766
PFAM domain coverage: 227 / 377 aa (60.2%)
1 aa377 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[80-131] | HisKA[144-209] | HATPase_c[257-365]
- Domain count: 3
- Matched identifier: HKOC_2634766
- Positioned domains: HAMP 80-131 ; HisKA 144-209 ; HATPase_c 257-365
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS15140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301005
AssemblyASM1330100v1 · Contighaploid
Genome composition3 655 992 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key