1 Response_reg#1
3-112 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:3:6.27e-28:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4437_RS13730
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013301005
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301005#G4437_RS13730Stable P2CS identifier used across views.
GenomeGCF_013301005Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 220 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:145:2.94e-22:220:77:77- Raw architecture: Response_reg:3:6.27e-28:112:111:111#Trans_reg_C:145:2.94e-22:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301005::NZ_JAAINR010000027.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15579-16241Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4437_13775RefSeq proteinWP_173815506.1
Context group ID
GCF_013301005::NZ_JAAINR010000027.1::G00027Context members
G4437_RS13730
Partner locus tags
G4437_RS13730
Partner old locus tags
G4437_13775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4437_RS13730Primary locus identifier stored in the genes table.
Old locus tagG4437_13775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINR010000027.1Sequence record reported by the local genomic context database.
Genomic interval15 579-16 241 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 579-16 241 ntGCF_013301005::NZ_JAAINR010000027.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301005::NZ_JAAINR010000027.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINR010000027.1All displayed genes belong to this local TCS context.
Neighborhood span15 579-16 241 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 579 nt16 241 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4437_RS13730GCF_013301005#G4437_RS13730
RROmpRCurrent focus
15 579-16 241 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS14495Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1737473
Simplified PFAM architecture for RROC_1737473
PFAM domain coverage: 185 / 220 aa (84.1%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1737473
- Positioned domains: Response_reg 3-111 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS14495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301005
AssemblyASM1330100v1 · Contighaploid
Genome composition3 655 992 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key