1 Response_reg#1
209-325 aa · 117 aa · 32.8% of protein
Raw token
Response_reg:209:4.6e-28:325:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4437_RS08950
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013301005
ClassRRTypeunclassifiedLength357 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301005#G4437_RS08950Stable P2CS identifier used across views.
GenomeGCF_013301005Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 357 aa (32.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:209:4.6e-28:325:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301005::NZ_JAAINR010000011.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span96701-97776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4437_08965RefSeq proteinWP_173829326.1
Context group ID
GCF_013301005::NZ_JAAINR010000011.1::G00006Context members
G4437_RS08950
Partner locus tags
G4437_RS08950
Partner old locus tags
G4437_08965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173829326.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4437_RS08950Primary locus identifier stored in the genes table.
Old locus tagG4437_08965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINR010000011.1Sequence record reported by the local genomic context database.
Genomic interval96 701-97 776 nt1 076 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 701-97 776 ntGCF_013301005::NZ_JAAINR010000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301005::NZ_JAAINR010000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINR010000011.1All displayed genes belong to this local TCS context.
Neighborhood span96 701-97 776 nt1 076 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 701 nt97 776 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4437_RS08950GCF_013301005#G4437_RS08950
RRunclassifiedCurrent focus
96 701-97 776 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301005#G4437_RS08950The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0465321
Simplified PFAM architecture for RROC_0465321
PFAM domain coverage: 234 / 357 aa (65.5%)
1 aa357 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[63-180] | Response_reg[209-324]
- Domain count: 2
- Matched identifier: RROC_0465321
- Positioned domains: HATPase_c 63-180 ; Response_reg 209-324
Cluster members and taxonomy
Representative gene: GCF_013301005#G4437_RS08950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301005
AssemblyASM1330100v1 · Contighaploid
Genome composition3 655 992 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key