1 SBP_bac_3#1
43-259 aa · 217 aa · 22.7% of protein
Raw token
SBP_bac_3:43:2.29e-27:259:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4500_RS11170
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_013300975
ClassHKTypeHybridLength957 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300975#G4500_RS11170Stable P2CS identifier used across views.
GenomeGCF_013300975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length957 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 957 aa (75.2%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa957 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.1% of protein
Raw token
SBP_bac_3:281:4.62e-17:482:215:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:8.26e-18:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.3% of protein
Raw token
HATPase_c:691:3.87e-27:808:118:1095 Response_reg#5
829-945 aa · 117 aa · 12.2% of protein
Raw token
Response_reg:829:2.09e-30:945:117:111- Raw architecture: SBP_bac_3:43:2.29e-27:259:229:224#SBP_bac_3:281:4.62e-17:482:215:224#HisKA:577:8.26e-18:642:66:64#HATPase_c:691:3.87e-27:808:118:109#Response_reg:829:2.09e-30:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300975::NZ_JAAINQ010000017.1::G00012
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span252-5410Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4500_11205RefSeq proteinWP_173815407.1
Context group ID
GCF_013300975::NZ_JAAINQ010000017.1::G00012Context members
G4500_RS11170G4500_RS11180
Partner locus tags
G4500_RS11170G4500_RS11180
Partner old locus tags
G4500_11205G4500_11215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815407.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4500_RS11170Primary locus identifier stored in the genes table.
Old locus tagG4500_11205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINQ010000017.1Sequence record reported by the local genomic context database.
Genomic interval252-3 125 nt2 874 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span252-5 410 ntGCF_013300975::NZ_JAAINQ010000017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300975::NZ_JAAINQ010000017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINQ010000017.1All displayed genes belong to this local TCS context.
Neighborhood span252-5 410 nt5 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 nt5 410 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4500_RS11170GCF_013300975#G4500_RS11170
HKHybridCurrent focus
252-3 125 nt · Forward (+)
G4500_RS11180GCF_013300975#G4500_RS11180
HKHybrid
3 488-5 410 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS11080Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0320327
Simplified PFAM architecture for HKOC_0320327
PFAM domain coverage: 498 / 957 aa (52.0%)
1 aa957 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[51-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0320327
- Positioned domains: SBP_bac_3 51-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS11080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300975
AssemblyASM1330097v1 · Contighaploid
Genome composition3 643 239 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key