1 Response_reg#1
6-113 aa · 108 aa · 47.6% of protein
Raw token
Response_reg:6:2.16e-30:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4500_RS06630
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013300975
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300975#G4500_RS06630Stable P2CS identifier used across views.
GenomeGCF_013300975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 227 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:2e-30:221:76:77- Raw architecture: Response_reg:6:2.16e-30:113:109:111#Trans_reg_C:146:2e-30:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300975::NZ_JAAINQ010000008.1::G00059
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11709-12392Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4500_06655RefSeq proteinWP_055265584.1
Context group ID
GCF_013300975::NZ_JAAINQ010000008.1::G00059Context members
G4500_RS06630
Partner locus tags
G4500_RS06630
Partner old locus tags
G4500_06655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055265584.1Primary protein accession used for annex mappings.
UniProt accessionA0A174IV17Primary UniProt accession resolved in the annex database.
UniProt IDA0A174IV17_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4500_RS06630Primary locus identifier stored in the genes table.
Old locus tagG4500_06655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval11 709-12 392 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 709-12 392 ntGCF_013300975::NZ_JAAINQ010000008.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300975::NZ_JAAINQ010000008.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span11 709-12 392 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 709 nt12 392 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4500_RS06630GCF_013300975#G4500_RS06630
RROmpRCurrent focus
11 709-12 392 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS03650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1360187
Simplified PFAM architecture for RROC_1360187
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1360187
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS03650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300975
AssemblyASM1330097v1 · Contighaploid
Genome composition3 643 239 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key