1 Response_reg#1
6-98 aa · 93 aa · 18.2% of protein
Raw token
Response_reg:6:6.96e-25:98:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS18200
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013300905
ClassRRTypeunclassifiedLength511 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300905#G4481_RS18200Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length511 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage125 / 511 aa (24.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa511 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
477-508 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:477:0.000000042:508:32:42- Raw architecture: Response_reg:6:6.96e-25:98:93:111#HTH_AraC:477:0.000000042:508:32:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300905::NZ_JAAINI010000095.1::G00062
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-1536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_18250RefSeq proteinWP_207718600.1
Context group ID
GCF_013300905::NZ_JAAINI010000095.1::G00062Context members
G4481_RS18200
Partner locus tags
G4481_RS18200
Partner old locus tags
G4481_18250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207718600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS18200Primary locus identifier stored in the genes table.
Old locus tagG4481_18250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000095.1Sequence record reported by the local genomic context database.
Genomic interval1-1 536 nt1 536 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 536 ntGCF_013300905::NZ_JAAINI010000095.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000095.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000095.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 536 nt1 536 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 536 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4481_RS18200GCF_013300905#G4481_RS18200
RRunclassifiedCurrent focus
1-1 536 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS18200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0145468
Simplified PFAM architecture for RROC_0145468
PFAM domain coverage: 168 / 511 aa (32.9%)
1 aa511 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[8-98] | HTH_18[432-508]
- Domain count: 2
- Matched identifier: RROC_0145468
- Positioned domains: Response_reg 8-98 ; HTH_18 432-508
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS18200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key