1 dCache_1#1
39-271 aa · 233 aa · 39.8% of protein
Raw token
dCache_1:39:0.00000000181:271:244:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS18140
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300905#G4481_RS18140Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage500 / 586 aa (85.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation4 items
2 HAMP#2
288-357 aa · 70 aa · 11.9% of protein
Raw token
HAMP:288:0.000000000000021:357:70:693 His_kinase#3
372-451 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:372:1.78e-33:451:80:804 HATPase_c#4
463-579 aa · 117 aa · 20.0% of protein
Raw token
HATPase_c:463:0.000000000000277:579:117:109- Raw architecture: dCache_1:39:0.00000000181:271:244:195#HAMP:288:0.000000000000021:357:70:69#His_kinase:372:1.78e-33:451:80:80#HATPase_c:463:0.000000000000277:579:117:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300905::NZ_JAAINI010000088.1::G00061
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span248-2008Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_18180RefSeq proteinWP_118700156.1
Context group ID
GCF_013300905::NZ_JAAINI010000088.1::G00061Context members
G4481_RS18140
Partner locus tags
G4481_RS18140
Partner old locus tags
G4481_18180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118700156.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3F5U4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3F5U4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS18140Primary locus identifier stored in the genes table.
Old locus tagG4481_18180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000088.1Sequence record reported by the local genomic context database.
Genomic interval248-2 008 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span248-2 008 ntGCF_013300905::NZ_JAAINI010000088.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000088.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000088.1All displayed genes belong to this local TCS context.
Neighborhood span248-2 008 nt1 761 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 nt2 008 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4481_RS18140GCF_013300905#G4481_RS18140
HKClassicCurrent focus
248-2 008 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481455#DXB71_RS07355Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132432
Simplified PFAM architecture for HKOC_1132432
PFAM domain coverage: 245 / 586 aa (41.8%)
1 aa586 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[306-356] | His_kinase[372-451] | HATPase_c[465-578]
- Domain count: 3
- Matched identifier: HKOC_1132432
- Positioned domains: HAMP 306-356 ; His_kinase 372-451 ; HATPase_c 465-578
Cluster members and taxonomy
Representative gene: GCF_003481455#DXB71_RS07355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key