1 Response_reg#1
1-84 aa · 84 aa · 96.6% of protein
Raw token
Response_reg:1:5e-20:84:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS14865
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_013300905
ClassRRTypeCheYLength87 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300905#G4481_RS14865Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length87 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage84 / 87 aa (96.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa87 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:5e-20:84:84:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300905::NZ_JAAINI010000033.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1796-2059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_14905RefSeq proteinWP_242856455.1
Context group ID
GCF_013300905::NZ_JAAINI010000033.1::G00040Context members
G4481_RS14865
Partner locus tags
G4481_RS14865
Partner old locus tags
G4481_14905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242856455.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS14865Primary locus identifier stored in the genes table.
Old locus tagG4481_14905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000033.1Sequence record reported by the local genomic context database.
Genomic interval1 796-2 059 nt264 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 796-2 059 ntGCF_013300905::NZ_JAAINI010000033.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000033.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000033.1All displayed genes belong to this local TCS context.
Neighborhood span1 796-2 059 nt264 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 796 nt2 059 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4481_RS14865GCF_013300905#G4481_RS14865
RRCheYCurrent focus
1 796-2 059 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS14865The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2474726
Simplified PFAM architecture for RROC_2474726
PFAM domain coverage: 83 / 87 aa (95.4%)
1 aa87 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-84]
- Domain count: 1
- Matched identifier: RROC_2474726
- Positioned domains: Response_reg 2-84
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS14865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key