1 dCache_1#1
47-270 aa · 224 aa · 38.7% of protein
Raw token
dCache_1:47:0.0000311:270:232:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS14825
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeClassicLength579 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300905#G4481_RS14825Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length579 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage480 / 579 aa (82.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa579 aa
Domain-by-domain annotation4 items
2 HAMP#2
292-360 aa · 69 aa · 11.9% of protein
Raw token
HAMP:292:0.000000000673:360:69:693 His_kinase#3
377-455 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:377:2.61e-25:455:79:804 HATPase_c#4
468-575 aa · 108 aa · 18.7% of protein
Raw token
HATPase_c:468:4.79e-17:575:117:109- Raw architecture: dCache_1:47:0.0000311:270:232:195#HAMP:292:0.000000000673:360:69:69#His_kinase:377:2.61e-25:455:79:80#HATPase_c:468:4.79e-17:575:117:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300905::NZ_JAAINI010000032.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37597-40852Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_14865RefSeq proteinWP_173828919.1
Context group ID
GCF_013300905::NZ_JAAINI010000032.1::G00039Context members
G4481_RS14820G4481_RS14825
Partner locus tags
G4481_RS14820G4481_RS14825
Partner old locus tags
G4481_14860G4481_14865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173828919.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS14825Primary locus identifier stored in the genes table.
Old locus tagG4481_14865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000032.1Sequence record reported by the local genomic context database.
Genomic interval39 113-40 852 nt1 740 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 597-40 852 ntGCF_013300905::NZ_JAAINI010000032.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000032.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000032.1All displayed genes belong to this local TCS context.
Neighborhood span37 597-40 852 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 597 nt40 852 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4481_RS14820GCF_013300905#G4481_RS14820
RRunclassified
37 597-39 120 nt · Forward (+)
G4481_RS14825GCF_013300905#G4481_RS14825
HKClassicCurrent focus
39 113-40 852 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS14825The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1169089
Simplified PFAM architecture for HKOC_1169089
PFAM domain coverage: 233 / 579 aa (40.2%)
1 aa579 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[309-360] | His_kinase[377-453] | HATPase_c[471-574]
- Domain count: 3
- Matched identifier: HKOC_1169089
- Positioned domains: HAMP 309-360 ; His_kinase 377-453 ; HATPase_c 471-574
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS14825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key