1 Response_reg#1
4-111 aa · 108 aa · 21.7% of protein
Raw token
Response_reg:4:2.27e-31:111:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS14160
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013300905
ClassRRTypeunclassifiedLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300905#G4481_RS14160Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 498 aa (36.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
405-444 aa · 40 aa · 8.0% of protein
Raw token
HTH_AraC:405:0.0000000182:444:40:423 HTH_AraC#3
461-496 aa · 36 aa · 7.2% of protein
Raw token
HTH_AraC:461:0.000000735:496:36:42- Raw architecture: Response_reg:4:2.27e-31:111:108:111#HTH_AraC:405:0.0000000182:444:40:42#HTH_AraC:461:0.000000735:496:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300905::NZ_JAAINI010000029.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45269-48455Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_14195RefSeq proteinWP_173828862.1
Context group ID
GCF_013300905::NZ_JAAINI010000029.1::G00032Context members
G4481_RS14155G4481_RS14160
Partner locus tags
G4481_RS14155G4481_RS14160
Partner old locus tags
G4481_14190G4481_14195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173828862.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS14160Primary locus identifier stored in the genes table.
Old locus tagG4481_14195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000029.1Sequence record reported by the local genomic context database.
Genomic interval46 959-48 455 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 269-48 455 ntGCF_013300905::NZ_JAAINI010000029.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000029.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000029.1All displayed genes belong to this local TCS context.
Neighborhood span45 269-48 455 nt3 187 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 269 nt48 455 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4481_RS14155GCF_013300905#G4481_RS14155
HKClassic
45 269-46 981 nt · Reverse (-)
G4481_RS14160GCF_013300905#G4481_RS14160
RRunclassifiedCurrent focus
46 959-48 455 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS14160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0160397
Simplified PFAM architecture for RROC_0160397
PFAM domain coverage: 190 / 498 aa (38.2%)
1 aa498 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[418-496]
- Domain count: 2
- Matched identifier: RROC_0160397
- Positioned domains: Response_reg 4-114 ; HTH_18 418-496
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS14160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key