1 HisKA#1
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000454:150:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS12420
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300905#G4481_RS12420Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 305 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-304 aa · 103 aa · 33.8% of protein
Raw token
HATPase_c:202:2.08e-30:304:103:109- Raw architecture: HisKA:85:0.0000000454:150:66:64#HATPase_c:202:2.08e-30:304:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300905::NZ_JAAINI010000023.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59743-61358Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_12450RefSeq proteinWP_173686032.1
Context group ID
GCF_013300905::NZ_JAAINI010000023.1::G00026Context members
G4481_RS12415G4481_RS12420
Partner locus tags
G4481_RS12415G4481_RS12420
Partner old locus tags
G4481_12445G4481_12450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173686032.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS12420Primary locus identifier stored in the genes table.
Old locus tagG4481_12450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000023.1Sequence record reported by the local genomic context database.
Genomic interval60 441-61 358 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 743-61 358 ntGCF_013300905::NZ_JAAINI010000023.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000023.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000023.1All displayed genes belong to this local TCS context.
Neighborhood span59 743-61 358 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 743 nt61 358 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4481_RS12415GCF_013300905#G4481_RS12415
RROmpR
59 743-60 435 nt · Forward (+)
G4481_RS12420GCF_013300905#G4481_RS12420
HKClassicCurrent focus
60 441-61 358 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300095#G4381_RS15710Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882491
Simplified PFAM architecture for HKOC_2882491
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882491
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_013300095#G4381_RS15710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key