1 His_kinase#1
376-453 aa · 78 aa · 13.4% of protein
Raw token
His_kinase:376:1.29e-26:453:78:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS10975
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeClassicLength584 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300905#G4481_RS10975Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length584 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 584 aa (32.5%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa584 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
473-584 aa · 112 aa · 19.2% of protein
Raw token
HATPase_c:473:0.000000857:584:115:109- Raw architecture: His_kinase:376:1.29e-26:453:78:80#HATPase_c:473:0.000000857:584:115:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300905::NZ_JAAINI010000020.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9802-11556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_11005RefSeq proteinWP_082424945.1
Context group ID
GCF_013300905::NZ_JAAINI010000020.1::G00022Context members
G4481_RS10975
Partner locus tags
G4481_RS10975
Partner old locus tags
G4481_11005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082424945.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS10975Primary locus identifier stored in the genes table.
Old locus tagG4481_11005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000020.1Sequence record reported by the local genomic context database.
Genomic interval9 802-11 556 nt1 755 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 802-11 556 ntGCF_013300905::NZ_JAAINI010000020.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000020.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000020.1All displayed genes belong to this local TCS context.
Neighborhood span9 802-11 556 nt1 755 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 802 nt11 556 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4481_RS10975GCF_013300905#G4481_RS10975
HKClassicCurrent focus
9 802-11 556 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS10295Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1142550
Simplified PFAM architecture for HKOC_1142550
PFAM domain coverage: 188 / 584 aa (32.2%)
1 aa584 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[376-454] | HATPase_c[475-583]
- Domain count: 2
- Matched identifier: HKOC_1142550
- Positioned domains: His_kinase 376-454 ; HATPase_c 475-583
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS10295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key