1 PilJ#1
38-124 aa · 87 aa · 8.2% of protein
Raw token
PilJ:38:0.0000316:124:100:112P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS10450
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeHybridLength1058 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300905#G4481_RS10450Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
PilJGGDEFHisKAHATPase_cResponse_reg
Protein length1058 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage540 / 1058 aa (51.0%)Merged over positioned domains only.
Domain description1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1058 aa
Domain-by-domain annotation5 items
2 GGDEF#2
200-350 aa · 151 aa · 14.3% of protein
Raw token
GGDEF:200:7.51e-21:350:156:1603 HisKA#3
678-744 aa · 67 aa · 6.3% of protein
Raw token
HisKA:678:0.0000000000000538:744:67:644 HATPase_c#4
791-909 aa · 119 aa · 11.2% of protein
Raw token
HATPase_c:791:1.93e-28:909:119:1095 Response_reg#5
933-1048 aa · 116 aa · 11.0% of protein
Raw token
Response_reg:933:5.37e-28:1048:116:111- Raw architecture: PilJ:38:0.0000316:124:100:112#GGDEF:200:7.51e-21:350:156:160#HisKA:678:0.0000000000000538:744:67:64#HATPase_c:791:1.93e-28:909:119:109#Response_reg:933:5.37e-28:1048:116:111
- Domain description: 1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300905::NZ_JAAINI010000018.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span29222-32398Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_10480RefSeq proteinWP_173828572.1
Context group ID
GCF_013300905::NZ_JAAINI010000018.1::G00013Context members
G4481_RS10450
Partner locus tags
G4481_RS10450
Partner old locus tags
G4481_10480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173828572.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS10450Primary locus identifier stored in the genes table.
Old locus tagG4481_10480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000018.1Sequence record reported by the local genomic context database.
Genomic interval29 222-32 398 nt3 177 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 222-32 398 ntGCF_013300905::NZ_JAAINI010000018.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000018.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000018.1All displayed genes belong to this local TCS context.
Neighborhood span29 222-32 398 nt3 177 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 222 nt32 398 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4481_RS10450GCF_013300905#G4481_RS10450
HKHybridCurrent focus
29 222-32 398 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS10450The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0253818
Simplified PFAM architecture for HKOC_0253818
PFAM domain coverage: 452 / 1058 aa (42.7%)
1 aa1058 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[200-352] | HisKA[678-744] | HATPase_c[792-907] | Response_reg[933-1048]
- Domain count: 4
- Matched identifier: HKOC_0253818
- Positioned domains: GGDEF 200-352 ; HisKA 678-744 ; HATPase_c 792-907 ; Response_reg 933-1048
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS10450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key