1 Response_reg#1
3-106 aa · 104 aa · 44.1% of protein
Raw token
Response_reg:3:1.07e-27:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS10230
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013300905
ClassRRTypeunclassifiedLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300905#G4481_RS10230Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 236 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
141-182 aa · 42 aa · 17.8% of protein
Raw token
HTH_AraC:141:0.000000351:182:42:423 HTH_AraC#3
202-232 aa · 31 aa · 13.1% of protein
Raw token
HTH_AraC:202:0.00000119:232:31:42- Raw architecture: Response_reg:3:1.07e-27:106:104:111#HTH_AraC:141:0.000000351:182:42:42#HTH_AraC:202:0.00000119:232:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300905::NZ_JAAINI010000017.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55331-57791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_10260RefSeq proteinWP_173828560.1
Context group ID
GCF_013300905::NZ_JAAINI010000017.1::G00012Context members
G4481_RS10225G4481_RS10230
Partner locus tags
G4481_RS10225G4481_RS10230
Partner old locus tags
G4481_10255G4481_10260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173828560.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS10230Primary locus identifier stored in the genes table.
Old locus tagG4481_10260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000017.1Sequence record reported by the local genomic context database.
Genomic interval57 081-57 791 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 331-57 791 ntGCF_013300905::NZ_JAAINI010000017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000017.1All displayed genes belong to this local TCS context.
Neighborhood span55 331-57 791 nt2 461 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 331 nt57 791 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4481_RS10225GCF_013300905#G4481_RS10225
HKClassic
55 331-56 998 nt · Forward (+)
G4481_RS10230GCF_013300905#G4481_RS10230
RRunclassifiedCurrent focus
57 081-57 791 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS10230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0999170
Simplified PFAM architecture for RROC_0999170
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-111] | HTH_18[156-232]
- Domain count: 2
- Matched identifier: RROC_0999170
- Positioned domains: Response_reg 3-111 ; HTH_18 156-232
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS10230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key