1 HAMP#1
269-338 aa · 70 aa · 12.6% of protein
Raw token
HAMP:269:0.00000166:338:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS10225
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeClassicLength555 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300905#G4481_RS10225Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length555 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 555 aa (44.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa555 aa
Domain-by-domain annotation3 items
2 His_kinase#2
353-424 aa · 72 aa · 13.0% of protein
Raw token
His_kinase:353:8.09e-24:424:75:803 HATPase_c#3
444-550 aa · 107 aa · 19.3% of protein
Raw token
HATPase_c:444:0.00000000000158:550:115:109- Raw architecture: HAMP:269:0.00000166:338:70:69#His_kinase:353:8.09e-24:424:75:80#HATPase_c:444:0.00000000000158:550:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300905::NZ_JAAINI010000017.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55331-57791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_10255RefSeq proteinWP_173828559.1
Context group ID
GCF_013300905::NZ_JAAINI010000017.1::G00012Context members
G4481_RS10225G4481_RS10230
Partner locus tags
G4481_RS10225G4481_RS10230
Partner old locus tags
G4481_10255G4481_10260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173828559.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS10225Primary locus identifier stored in the genes table.
Old locus tagG4481_10255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000017.1Sequence record reported by the local genomic context database.
Genomic interval55 331-56 998 nt1 668 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 331-57 791 ntGCF_013300905::NZ_JAAINI010000017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000017.1All displayed genes belong to this local TCS context.
Neighborhood span55 331-57 791 nt2 461 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 331 nt57 791 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4481_RS10225GCF_013300905#G4481_RS10225
HKClassicCurrent focus
55 331-56 998 nt · Forward (+)
G4481_RS10230GCF_013300905#G4481_RS10230
RRunclassified
57 081-57 791 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS10225The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1278688
Simplified PFAM architecture for HKOC_1278688
PFAM domain coverage: 158 / 555 aa (28.5%)
1 aa555 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[353-425] | HATPase_c[446-530]
- Domain count: 2
- Matched identifier: HKOC_1278688
- Positioned domains: His_kinase 353-425 ; HATPase_c 446-530
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS10225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key