1 HisKA#1
202-265 aa · 64 aa · 15.0% of protein
Raw token
HisKA:202:0.0000000757:265:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS09140
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeClassicLength426 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300905#G4481_RS09140Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length426 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 426 aa (40.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa426 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-423 aa · 110 aa · 25.8% of protein
Raw token
HATPase_c:314:2.91e-30:423:110:109- Raw architecture: HisKA:202:0.0000000757:265:64:64#HATPase_c:314:2.91e-30:423:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300905::NZ_JAAINI010000014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75950-77895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_09160RefSeq proteinWP_173828480.1
Context group ID
GCF_013300905::NZ_JAAINI010000014.1::G00008Context members
G4481_RS09135G4481_RS09140
Partner locus tags
G4481_RS09135G4481_RS09140
Partner old locus tags
G4481_09155G4481_09160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173828480.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS09140Primary locus identifier stored in the genes table.
Old locus tagG4481_09160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000014.1Sequence record reported by the local genomic context database.
Genomic interval76 615-77 895 nt1 281 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 950-77 895 ntGCF_013300905::NZ_JAAINI010000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000014.1All displayed genes belong to this local TCS context.
Neighborhood span75 950-77 895 nt1 946 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 950 nt77 895 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4481_RS09135GCF_013300905#G4481_RS09135
RROmpR
75 950-76 639 nt · Forward (+)
G4481_RS09140GCF_013300905#G4481_RS09140
HKClassicCurrent focus
76 615-77 895 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS09140The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2210393
Simplified PFAM architecture for HKOC_2210393
PFAM domain coverage: 175 / 426 aa (41.1%)
1 aa426 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[202-265] | HATPase_c[314-424]
- Domain count: 2
- Matched identifier: HKOC_2210393
- Positioned domains: HisKA 202-265 ; HATPase_c 314-424
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS09140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key