1 HAMP#1
285-351 aa · 67 aa · 11.8% of protein
Raw token
HAMP:285:0.0000000588:351:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS08670
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300905
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300905#G4481_RS08670Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 569 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 His_kinase#2
366-445 aa · 80 aa · 14.1% of protein
Raw token
His_kinase:366:1.89e-28:445:80:803 HATPase_c#3
456-561 aa · 106 aa · 18.6% of protein
Raw token
HATPase_c:456:5.78e-16:561:115:109- Raw architecture: HAMP:285:0.0000000588:351:67:69#His_kinase:366:1.89e-28:445:80:80#HATPase_c:456:5.78e-16:561:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300905::NZ_JAAINI010000013.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72834-74543Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_08690RefSeq proteinWP_082425020.1
Context group ID
GCF_013300905::NZ_JAAINI010000013.1::G00006Context members
G4481_RS08670
Partner locus tags
G4481_RS08670
Partner old locus tags
G4481_08690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_082425020.1Primary protein accession used for annex mappings.
UniProt accessionA0A174JHP1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174JHP1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS08670Primary locus identifier stored in the genes table.
Old locus tagG4481_08690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000013.1Sequence record reported by the local genomic context database.
Genomic interval72 834-74 543 nt1 710 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 834-74 543 ntGCF_013300905::NZ_JAAINI010000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000013.1All displayed genes belong to this local TCS context.
Neighborhood span72 834-74 543 nt1 710 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 834 nt74 543 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4481_RS08670GCF_013300905#G4481_RS08670
HKClassicCurrent focus
72 834-74 543 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS16100Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1217043
Simplified PFAM architecture for HKOC_1217043
PFAM domain coverage: 179 / 569 aa (31.5%)
1 aa569 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-443] | HATPase_c[462-563]
- Domain count: 2
- Matched identifier: HKOC_1217043
- Positioned domains: His_kinase 367-443 ; HATPase_c 462-563
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS16100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key