1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:2.01e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS06700
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013300905
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300905#G4481_RS06700Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:155:6.83e-33:231:77:77- Raw architecture: Response_reg:6:2.01e-38:115:111:111#Trans_reg_C:155:6.83e-33:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300905::NZ_JAAINI010000009.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59202-61641Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_06715RefSeq proteinWP_173828304.1
Context group ID
GCF_013300905::NZ_JAAINI010000009.1::G00064Context members
G4481_RS06695G4481_RS06700
Partner locus tags
G4481_RS06695G4481_RS06700
Partner old locus tags
G4481_06710G4481_06715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173828304.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3EZI0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3EZI0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS06700Primary locus identifier stored in the genes table.
Old locus tagG4481_06715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000009.1Sequence record reported by the local genomic context database.
Genomic interval60 928-61 641 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 202-61 641 ntGCF_013300905::NZ_JAAINI010000009.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000009.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000009.1All displayed genes belong to this local TCS context.
Neighborhood span59 202-61 641 nt2 440 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 202 nt61 641 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4481_RS06695GCF_013300905#G4481_RS06695
HKClassic
59 202-60 962 nt · Reverse (-)
G4481_RS06700GCF_013300905#G4481_RS06700
RROmpRCurrent focus
60 928-61 641 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300905#G4481_RS06700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0971859
Simplified PFAM architecture for RROC_0971859
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0971859
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_013300905#G4481_RS06700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key