1 Response_reg#1
6-113 aa · 108 aa · 43.9% of protein
Raw token
Response_reg:6:4.02e-24:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4481_RS03710
Response regulator LytTR family
Fusicatenibacter saccharivorans · GCF_013300905
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300905#G4481_RS03710Stable P2CS identifier used across views.
GenomeGCF_013300905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 246 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-234 aa · 94 aa · 38.2% of protein
Raw token
LytTR:141:1.17e-19:234:99:98- Raw architecture: Response_reg:6:4.02e-24:113:110:111#LytTR:141:1.17e-19:234:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300905::NZ_JAAINI010000004.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span93028-93768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4481_03740RefSeq proteinWP_055219161.1
Context group ID
GCF_013300905::NZ_JAAINI010000004.1::G00049Context members
G4481_RS03710
Partner locus tags
G4481_RS03710
Partner old locus tags
G4481_03740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055219161.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GDB9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GDB9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4481_RS03710Primary locus identifier stored in the genes table.
Old locus tagG4481_03740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINI010000004.1Sequence record reported by the local genomic context database.
Genomic interval93 028-93 768 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 028-93 768 ntGCF_013300905::NZ_JAAINI010000004.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300905::NZ_JAAINI010000004.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINI010000004.1All displayed genes belong to this local TCS context.
Neighborhood span93 028-93 768 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 028 nt93 768 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4481_RS03710GCF_013300905#G4481_RS03710
RRLytTRCurrent focus
93 028-93 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS10605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0774347
Simplified PFAM architecture for RROC_0774347
PFAM domain coverage: 206 / 246 aa (83.7%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-114] | LytTR[141-236]
- Domain count: 2
- Matched identifier: RROC_0774347
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; LytTR 141-236 ; LytTR 141-236
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS10605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300905
AssemblyASM1330090v1 · Contighaploid
Genome composition3 982 851 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key