1 Response_reg#1
24-133 aa · 110 aa · 44.7% of protein
Raw token
Response_reg:24:3.3e-37:133:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4386_RS15125
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_013300525
ClassRRTypeOmpRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300525#G4386_RS15125Stable P2CS identifier used across views.
GenomeGCF_013300525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 246 aa (75.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
166-240 aa · 75 aa · 30.5% of protein
Raw token
Trans_reg_C:166:3.92e-21:240:76:77- Raw architecture: Response_reg:24:3.3e-37:133:110:111#Trans_reg_C:166:3.92e-21:240:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300525::NZ_JAAILZ010000051.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7104-9040Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4386_15095RefSeq proteinWP_004840586.1
Context group ID
GCF_013300525::NZ_JAAILZ010000051.1::G00040Context members
G4386_RS15120G4386_RS15125
Partner locus tags
G4386_RS15120G4386_RS15125
Partner old locus tags
G4386_15090G4386_15095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004840586.1Primary protein accession used for annex mappings.
UniProt accessionA7AYV7Primary UniProt accession resolved in the annex database.
UniProt IDA7AYV7_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4386_RS15125Primary locus identifier stored in the genes table.
Old locus tagG4386_15095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILZ010000051.1Sequence record reported by the local genomic context database.
Genomic interval8 300-9 040 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 104-9 040 ntGCF_013300525::NZ_JAAILZ010000051.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300525::NZ_JAAILZ010000051.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILZ010000051.1All displayed genes belong to this local TCS context.
Neighborhood span7 104-9 040 nt1 937 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 104 nt9 040 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4386_RS15120GCF_013300525#G4386_RS15120
HKClassic
7 104-8 303 nt · Reverse (-)
G4386_RS15125GCF_013300525#G4386_RS15125
RROmpRCurrent focus
8 300-9 040 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS02050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0769444
Simplified PFAM architecture for RROC_0769444
PFAM domain coverage: 184 / 246 aa (74.8%)
1 aa246 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[24-133] | Trans_reg_C[166-239]
- Domain count: 2
- Matched identifier: RROC_0769444
- Positioned domains: Response_reg 24-133 ; Response_reg 24-133 ; Trans_reg_C 166-239 ; Trans_reg_C 166-239
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS02050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013300525
AssemblyASM1330052v1 · Contighaploid
Genome composition3 341 632 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 43 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key