1 Response_reg#1
4-116 aa · 113 aa · 50.7% of protein
Raw token
Response_reg:4:4.43e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G7A69_RS00090
Response regulator NarL family
Dorea longicatena · GCF_013300385
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300385#G7A69_RS00090Stable P2CS identifier used across views.
GenomeGCF_013300385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 223 aa (75.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
157-211 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:157:1.01e-17:211:55:58- Raw architecture: Response_reg:4:4.43e-33:116:113:111#HTH_LUXR:157:1.01e-17:211:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300385::NZ_JAAILL010000001.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17715-18386Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG7A69_00090RefSeq proteinWP_006428511.1
Context group ID
GCF_013300385::NZ_JAAILL010000001.1::G00011Context members
G7A69_RS00090
Partner locus tags
G7A69_RS00090
Partner old locus tags
G7A69_00090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428511.1Primary protein accession used for annex mappings.
UniProt accessionA6BDP8Primary UniProt accession resolved in the annex database.
UniProt IDA6BDP8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG7A69_RS00090Primary locus identifier stored in the genes table.
Old locus tagG7A69_00090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILL010000001.1Sequence record reported by the local genomic context database.
Genomic interval17 715-18 386 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 715-18 386 ntGCF_013300385::NZ_JAAILL010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300385::NZ_JAAILL010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILL010000001.1All displayed genes belong to this local TCS context.
Neighborhood span17 715-18 386 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 715 nt18 386 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G7A69_RS00090GCF_013300385#G7A69_RS00090
RRNarLCurrent focus
17 715-18 386 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587342
Simplified PFAM architecture for RROC_1587342
PFAM domain coverage: 169 / 223 aa (75.8%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[156-211]
- Domain count: 2
- Matched identifier: RROC_1587342
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 156-211 ; GerE 156-211
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013300385
AssemblyASM1330038v1 · Contighaploid
Genome composition3 343 167 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key